education
In 2024/2025, I developed an introductory Python course for 1st year of Nanobiology program. The course team took part in the Blended Course Design Bootcamp in Dordrecht, June 2024. Course development was further financially supported by TU Delft ESA and Nanobiology program.
For the purposes of the introductory Python course, I made an open interactive textbook. Its second edition is available here.
In September 2023, I joined the Board of Studies Nanobiology. I also worked on restructuring of the bachelor curriculum in Nanobiology.
In June 2024, I completed University Teaching Qualification (UTQ).
In academic year 2024/2025, I was a member of TU Delft Teaching Academy Panel.
Starting in 2025, I joined Innovation in Delft Engineering Education (IDEE) on the topic of Teaching and Learning in the Age of AI.
In January 2025, I started to work on the project “AI-enhanced programming education for applied scientists” as a TU Delft Education Fellow.
current
past
supervised theses
- Lina van Steenis, Structural complementarity drives selective RNA binding by the SARS-CoV-2 nucleocapsid protein, 2024-2025
- Eva Heemskerk, Spatial localization of cytokine mRNA in CD8+ T cells, 2024-2025
- Renske Voerman, Exploring the protein domain interaction map of yeast polarity in 3D using bioinformatic tools, 2023-2024
- Stefan Loonen, Phosphorylation-induced structural dynamics of SARS-CoV-2 N-protein - Insights from molecular dynamics simulations, 2023-2024
- Toma Vucinic, Leveraging Machine Learning to Predict IspG Compatibility Across Organisms, 2024-2025
- Loyola Moya Lafuente, On the dynamics of photoreactive proteins: Molecular Dynamics simulations of LOV2 and iLID variants, 2024-2025
- Jesse Oudejans, Investigating Alphafold-Initialized Structures in Molecular Dynamics Simulations to Predict LCST Phase Behavior of Elastin-Like Polypeptides, 2024-2025
- Laetitia Guerin, Machine Learning for Prediction of Redox Potentials in Iron-Sulfur Proteins, 2024-2025
- Sien Wagenaar, Engineering a photoreactive ParR substitute for artificial DNA segregation in synthetic cells - insights from molecular dynamics and biophysical characterization, 2024-2025
- Ada Maria Precup, Defining a protein interaction network - Mapping the interaction partners of Spa2 in yeast, 2023-2024
- Eli Teitler, Simulating the dynamics of lipid bilayers, 2023-2024
- Owyn Kamerman, RNA distribution clustering - Unravelling cytotoxic T-cells, 2023-2024
- Jesse Poort, The viability and potential of Mycoplasma mycoides subsp. capri genes in liposome minimal cell systems, 2023-2024
- Stephany Laclé, The impact of Arg2579Trp mutation on the homodimer formation of mouse teneurin-3, 2023-2024
- Jaldert François, Meta-analyses of mutational networks that are affected during evolution experiments using the CAMEL database, 2020-2021
- Michael Shawn Neilson, Expanding the functionalities of CAMEL, the online Compendium of Adaptive Microbial Experiments in the Lab, 2020-2021
- Niels Schrauwen, Molecular dynamic modelling of the transport activity of GadC variants that cause increased antibiotic persistence in E. coli, 2020-2021
- Wouter Van Assche, Properties of the drug binding pockets in natural variants of human GPCR proteins, 2019-2020
- Samuel Nathan Haberman, Uncovering hidden functionalities of mutations: Adding prediction tools to CAMEL - a database of experimental evolution, 2019-2020
- Jasper Schelfhout, Effect of acetylation and phosphorylation on protein interactions within the G protein-coupled receptor signalling pathway, 2018-2019